Facilities and equipment
Please use information from our facilities and other resources (PDF link) page for your grant applications.
Laser Safety
Please use information from our Columbia Laser Safety Manual (PDF link) for safe use of lasers.
Software
Image viewer and analysis software
Leica LASX office download (PC only, not Mac)
Zeiss Zen Lite download (PC only, requires registration)
Nikon NIS elements download (mac or pc)
Aivia Image analysis (License Required)
Open Source image analysis software
Fiji (Imagej version that includes many plugins)
QuPath (for large images and histology images)
CellPose (for automated image segmentation)
CellProfiler (for image analysis, cell detection)
Additional resources for microscopy and image analysis
Confocal and Specialized Microscopy Shared Resource (CSMSR) CUMC Imaging facility
image.sc (forum for imaging discussion)
FPbase (fluorescence spectral viewer - fluorophore combinations)
Leica microscope tutorials on Youtube
Carl Zeiss Microscopy Online Campus
Macros written for Imagej
(click icon, then right click and save with .ijm extension OR copy-paste into ImageJ text editor and save)
Extract image files within .lif file, save as .tif in new folder
Lists and counts all files in a folder
Measures the % difference in color of two selections
